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1995

Some poster presentations at the Intelligen Systems for Molecular Biology'95 (Cambridge, UK, July 16-19, 1995)

1. Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh (1995),
   "Periodic sequence patterns in human exons",
   in ISMB95, 30-38.
   [ PDF ]

2. M.Y. Borodovsky, J.D. McIninch, E.V. Koonin, K.E. Rudd, C. Medigue, A. Danchin (1995),
   "Detection of new genes in a bacterial genome using Markov models for three gene classes",
   Nucleic Acids Research, 23: 3554-3562.
   [ abstract]

3. Q.K. Chen, G.Z. Hertz, G. Stormo (1995),
   "MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices",
   Computer Applications in Biosciences, 11: 563-566.

4. J.W. Fickett (1995),
   "ORFs and genes: How strong a connection?",
   Journal of Computational Biology, 2(1): 117-123.
   [ abstract]

5. J.W. Fickett, R. Guigo (1995),
   "Computational gene identification,"
   in Internet for the Molecular Biologist , ed. S. Swindell.

6. YM Fraenkel, Y Mandel, D Friedberg, H Margalit (1995), "Identification of common motifs in unaligned DNA sequences: application to Escherichia coli Lrp regulon", Computer Applications in Biosciences, 11:379-387.

7. M.S. Gelfand(1995),
   "Prediction of function in DNA sequence analysis",
   Journal of Computational Biology, 2(1):87-117.
   [ abstract] [ Medline entry]

   [A bibliography compiled by the author called FANS-REF can be FTPed from ftp://imb.imb.ar.ru . To read the documentation on this bibliography, click here .]
   updated on May 1997: download the data file (release 12.1, total 2104 references)

8. R. Guigo, J.W. Fickett (1995) ,
   "Distinctive sequence features in protein coding, non-coding, and intergenic human DNA",
   Journal of Molecular Biology, 253:51-60.
   [ abstract] [ Medline entry]

9. A. Kamb, C. Wang, A. Thomas, B.S. DeHoff, F.H. Norris, K. Richardson, J. Rine, M. Skolnick, and P.R. Rosteck Jr. (1995),
   "Software trapping: a strategy for finding genes in large genomic regions",
   Computers and biomedical research, 28(2):140-153.
   [ abstract]

10. O.V. Kel, A.G. Romachenko, A.E. Kel, A. Naumochkin, N.A. Kolchanov (1995),
    "Structure of data representation in TRRD - database of transcription regulatory regions on eukaryotic genomes",
    in HICSS95 ,

11. Y.V. Kondrakhin, A.E. Kel, N.A. Kolchanov, A.G. Romashchenko (1995),
    "Eukaryotic promoter recognition by binding sites for transcription factors",
    Computer Applications in Biosciences, 11, 477-488.

12. Niels I. Larsen, Jacob Engelbrecht and Søren Brunak (1995),
    "Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal",
    Nucleic Acids Research, 23(7), 1223-1230.
    [abstract]

13. D.S. Prestridge (1995),
    "Predicting Pol II promoter sequence using transcription factor binding sites",
    Journal of Molecular Biology, 249:923-932.
    [ Medline entry]

14. BVB Reddy, MW Pandit (1995),
    "A statistical analytical approach to decipher information from biological sequences: Application to murine splice-site analysis and prediction",
    Journal of Biomolecular Structure and Dynamics, 12:785-801.

15. S. Salzberg (1995),
    "Locating protein coding regions in human DNA using a decision tree algorithm",
    Journal of Computational Biology, 2(3): 473-486.

16. P. Senapathy (1995),
    "Introns and the origin of protein-coding genes",
    Science, 268: 1366-1367.

17. E.E. Snyder, G.D. Stormo (1995),
    "Identification of protein coding regions in genomic DNA",
    Journal of Molecular Biology, 248: 1-18.
    [abstract]

    [the GeneParser service is provided at http://beagle.colorado.edu/~eesnyder/GeneParser.html ]

18. V.V. Solovyev, A.A. Salamov, C.B. Lawrence (1995),
    "Prediction of human gene structure using linear discriminant functions and dynamic programming",
    in ISMB95, 367-375.
    [abstract] [ Medline entry]

    [the BCM Genefinder service is provided at http://dot.imgen.bcm.tmc.edu:9331/gene-finder/gf.html ]