GENEHUNTER documentation

version 2.0 beta, November 2, 1998

Mark J Daly, Leonid Kruglyak, Stephen Pratt, Nick Houstis, Mary P Reeve, A Kirby, Eric S Lander
(Whitehead Institute)

1. data preparation commands

LOAD MARKERS | USE

2. mapping commands

SCAN PEDIGREES | TOTAL STAT | SINGLE POINT | COUNT RECS | HAPLOTYPE | DISCARD | MAX BITS | SKIP LARGE | ANALYSIS | SCORE | POSTSCRIPT OUTPUT | LETTERS | DRAWING SCALE | OFF END | INCREMENT | MAP FUNCTION | UNITS | DISPLAY SCORES

3. sibs qualitative trait mapping commands

(commands to map loci using affection status)

ESTIMATE| EXCLUDE

4. sibs quantitative trait loci (QTL) commands

(commands to map loci using numerical phenotype scorings)

HASEMAN ELSTON | ML VARIANCE | NO DOM VAR| NONPARAMETRIC

5. other sibs commands

(of position vs. z-score)

PAIRS USED | DUMP IBD

6. variance components

(of affection status)

VARIANCE COMPONENTS| SET STARTING VALUES| MEANS BY SEX

7. tdt commands

TDT | TDT2 | TDT3 | TDT4 | PERM1 | PERM2

8. additional commands

HELP | PHOTO | RUN | SYSTEM | CHANGE DIRECTORY | TIME | QUIT

software list
home
this documentation is converted to html by wli on nov 4, 1998